Essential Oil-Induced Downregulation of Aflatoxin Biosynthetic Genes in Aspergillus Flavus: A Natural Strategy for Reducing Crop Contamination
DOI:
https://doi.org/10.17977/um067v6i82026p3Keywords:
Aspergillus Flavus, Aflatoxin B1, Cinnamon Oil, Clove Oil, Thyme Oil, Essential Oils, RT-qPCR, aflR, aflDAbstract
Background: Aspergillus flavus is an important aflatoxigenic fungus associated with contamination of maize, wheat, peanuts and other stored crops. Aflatoxin B1 (AFB1) is a highly toxic and carcinogenic secondary metabolite, and its biosynthesis is controlled by clustered structural and regulatory genes, including aflR, aflS, aflD, aflM, aflP and aflQ. Objective: This study evaluated the inhibitory effects of cinnamon, clove and thyme essential oils on A. flavus growth, AFB1 production and relative expression of selected aflatoxin biosynthetic genes under controlled in vitro conditions. Methods: An aflatoxigenic A. flavus isolate was exposed to essential oils at 0.25, 0.50 and 1.00 µL/mL. Radial growth inhibition was determined on potato dextrose agar, while mycelial dry weight and AFB1 production were evaluated in yeast extract sucrose broth. AFB1 was quantified by HPLC with fluorescence detection. Relative expression of aflR, aflS, aflD, aflM, aflP and aflQ was determined by RT-qPCR using β-tubulin as the reference gene and the 2^-ΔΔCt method. Results: The results showed a concentration-dependent decrease in fungal growth, biomass and AFB1 production. Cinnamon oil produced the strongest inhibition, reducing radial growth by 54.3% and AFB1 production by 81.7% at 1.00 µL/mL. Clove oil reduced AFB1 by 73.4%, whereas thyme oil reduced it by 65.2% at the same concentration. RT-qPCR analysis showed downregulation of all tested biosynthetic genes, with aflR and aflD showing the most consistent suppression. Cinnamon oil reduced aflR expression to 0.24-fold and aflD expression to 0.19-fold compared with the untreated control. Conclusion: The findings demonstrate that essential oils, particularly cinnamon and clove oils, reduced AFB1 production through both growth inhibition and transcriptional suppression of key aflatoxin biosynthetic genes. These results support the use of plant-derived essential oils as natural anti-aflatoxigenic agents in strategies aimed at reducing crop contamination.
References
Abrehame, S., Manoj, V. R., Hailu, M., Chen, Y.-Y., Lin, Y.-C., & Chen, Y.-P. (2023). Aflatoxins: Source, detection, clinical features and prevention. Processes, 11(1), 204. https://doi.org/10.3390/pr11010204 DOI: https://doi.org/10.3390/pr11010204
Balan, B., et al. (2024). Aflatoxins in food: Prevalence, health effects, and emerging control strategies. Food Science & Nutrition. https://doi.org/10.1002/fsh3.12030 DOI: https://doi.org/10.1002/fsh3.12030
Caceres, I., Al Khoury, A., El Khoury, R., Lorber, S., Atoui, A., Puel, O., & Bailly, J. D. (2020). Aflatoxin biosynthesis and genetic regulation: A review. Toxins, 12(3), 150. https://doi.org/10.3390/toxins12030150 DOI: https://doi.org/10.3390/toxins12030150
Dai, C., et al. (2022). Aflatoxin B1 toxicity and protective effects of curcumin: Molecular mechanisms and therapeutic potential. Antioxidants, 11(10), 2031. https://doi.org/10.3390/antiox11102031 DOI: https://doi.org/10.3390/antiox11102031
Ferrara, M., Perrone, G., & Gallo, A. (2022). Recent advances in biosynthesis and regulatory mechanisms of principal mycotoxins. Current Opinion in Food Science, 48, 100923. https://doi.org/10.1016/j.cofs.2022.100923 DOI: https://doi.org/10.1016/j.cofs.2022.100923
Gallo, A., et al. (2021). Current approaches for advancement in understanding the biosynthesis of mycotoxins. Frontiers in Microbiology. https://pmc.ncbi.nlm.nih.gov/articles/PMC8346063/
Gwad, M. M. A., El-Sayed, A. S. A., Abdel-Fattah, G. M., Abdelmoteleb, M., & Abdel-Fattah, G. G. (2024). Potential fungicidal and antiaflatoxigenic effects of cinnamon essential oils on Aspergillus flavus inhabiting the stored wheat grains. BMC Plant Biology, 24, 394. https://doi.org/10.1186/s12870-024-05065-w DOI: https://doi.org/10.1186/s12870-024-05065-w
Hamza, Z. K., et al. (2025). Unraveling the antifungal and aflatoxin B1 inhibitory efficacy of cinnamon essential oil-based chitosan nanoparticles against Aspergillus flavus. Scientific Reports. https://pmc.ncbi.nlm.nih.gov/articles/PMC12041263/ DOI: https://doi.org/10.1038/s41598-025-95557-y
Mafe, A. N., & Büsselberg, D. (2024). Mycotoxins in food: Cancer risks and strategies for control. Foods, 13(21), 3502. https://doi.org/10.3390/foods13213502 DOI: https://doi.org/10.3390/foods13213502
Moon, Y.-S., Lee, H.-S., & Lee, S.-E. (2018). Inhibitory effects of three monoterpenes from ginger essential oil on growth and aflatoxin production of Aspergillus flavus and their gene regulation in aflatoxin biosynthesis. Applied Biological Chemistry, 61, 243–250. https://doi.org/10.1007/s13765-018-0352-x DOI: https://doi.org/10.1007/s13765-018-0352-x
Moon, Y.-S., Kim, H.-M., Chun, H. S., & Lee, S.-E. (2018). Organic acids suppress aflatoxin production via lowering expression of aflatoxin biosynthesis-related genes in Aspergillus flavus. Food Control, 88, 207–216. https://doi.org/10.1016/j.foodcont.2018.01.017 DOI: https://doi.org/10.1016/j.foodcont.2018.01.017
Loi, N. V., Quy, T. V., Duc, N. Q., & Hanh, D. T. (2024). Study on the ability to inhibit the growth and aflatoxin B1 production from Aspergillus flavus using some essential oils. Food Research, 8(6), 313–317. https://doi.org/10.26656/fr.2017.8(6).092 DOI: https://doi.org/10.26656/fr.2017.8(6).092
Omolehin, O., et al. (2024). Host-induced gene silencing of the Aspergillus flavus O-methyltransferase gene reduces aflatoxin contamination. Toxins. https://europepmc.org/articles/PMC11769010 DOI: https://doi.org/10.3390/toxins17010008
Pickova, D., Ostry, V., Toman, J., & Malir, F. (2021). Aflatoxins: History, significant milestones, recent data on their toxicity and ways to mitigation. Toxins, 13(6), 399. https://doi.org/10.3390/toxins13060399 DOI: https://doi.org/10.3390/toxins13060399
Safari, N., Mirabzadeh Ardakani, M., Hemmati, R., Parroni, A., Beccaccioli, M., & Reverberi, M. (2020). The potential of plant-based bioactive compounds on inhibition of aflatoxin B1 biosynthesis and down-regulation of aflR, aflM and aflP genes. Antibiotics, 9(11), 728. https://doi.org/10.3390/antibiotics9110728 DOI: https://doi.org/10.3390/antibiotics9110728
Bustin, S. A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, M., Nolan, T., Pfaffl, M. W., Vandesompele, J., & Wittwer, C. T. (2025). MIQE 2.0: Revision of the minimum information for publication of quantitative real-time PCR experiments. Clinical Chemistry, 71(6), 634–651. https://pubmed.ncbi.nlm.nih.gov/40272429/
Shabeer, S., Asad, S., Jamal, A., & Ali, A. (2022). Aflatoxin contamination, its impact and management strategies: An updated review. Toxins, 14(5), 307. https://doi.org/10.3390/toxins14050307 DOI: https://doi.org/10.3390/toxins14050307
Singh, P. P., et al. (2026). Systematic investigation of aflatoxigenic Aspergillus flavus and plant-derived natural compounds for reducing aflatoxin B1. International Journal of Food Microbiology. https://www.sciencedirect.com/science/article/pii/S0168160526000115
Syraji, Y., et al. (2025). Comprehensive review of aflatoxin contamination, its occurrence, toxicity, detection and management. Food Production, Processing and Nutrition. https://doi.org/10.1007/s44187-025-00680-4 DOI: https://doi.org/10.1007/s44187-025-00680-4
Tumukunde, E., et al. (2021). Updates on the functions and molecular mechanisms of the genes involved in Aspergillus flavus development and biosynthesis of aflatoxins. Journal of Fungi. https://pmc.ncbi.nlm.nih.gov/articles/PMC8401812/ DOI: https://doi.org/10.3390/jof7080666
Wang, W., et al. (2022). Genetic regulation of mycotoxin biosynthesis. Journal of Fungi, 9(1), 21. https://doi.org/10.3390/jof9010021 DOI: https://doi.org/10.3390/jof9010021
Xiang, F., Zhao, Q., Zhao, K., Pei, H., & Tao, F. (2020). The efficacy of composite essential oils against aflatoxigenic fungus Aspergillus flavus in maize. Toxins, 12(9), 562. https://doi.org/10.3390/toxins12090562 DOI: https://doi.org/10.3390/toxins12090562
Ye, K., et al. (2025). Molecular mechanism of aflatoxin B1 synthesis related to AfVerB regulation in Aspergillus flavus. Journal of Fungi, 11(4), 293. https://doi.org/10.3390/jof11040293 DOI: https://doi.org/10.3390/jof11040293
Zalewski, D., & Bogucka-Kocka, A. (2025). RQdeltaCT: An open-source R package for relative quantification of gene expression using delta Ct methods. Scientific Reports, 15, 33868. https://doi.org/10.1038/s41598-025-11822-0 DOI: https://doi.org/10.1038/s41598-025-11822-0
Tian, F., Lee, S. Y., Woo, S. Y., Chun, H. S., & Lee, S. E. (2022). Antifungal activity of essential oil and plant-derived natural compounds against Aspergillus flavus. Antibiotics, 11(12), 1727. https://doi.org/10.3390/antibiotics11121727 DOI: https://doi.org/10.3390/antibiotics11121727
Hampton, T. H., Taub, L., Ferreria-Fukutani, K., Stanton, B. A., & MacKenzie, T. A. (2025). Analyzing qPCR data: Better practices to facilitate rigor and reproducibility. Biochemistry and Biophysics Reports, 44, 102356. https://doi.org/10.1016/j.bbrep.2025.102356 DOI: https://doi.org/10.1016/j.bbrep.2025.102356
NCI. (2024). Aflatoxins. National Cancer Institute. https://www.cancer.gov/about-cancer/causes-prevention/risk/substances/aflatoxins
EFSA. (2020). Aflatoxins in food. European Food Safety Authority. https://www.efsa.europa.eu/en/topics/topic/aflatoxins-food
WHO/JECFA. (2024). Aflatoxins: Chemical safety evaluation. World Health Organization. https://apps.who.int/food-additives-contaminants-jecfa-database/Home/Chemical/5639
Yu, Y., Zhang, X., Li, S., Wang, Y., & Liu, X. (2025). Synergistic inhibition of Aspergillus flavus by organic acid salts. Frontiers in Veterinary Science, 12, 1608792. https://doi.org/10.3389/fvets.2025.1608792 DOI: https://doi.org/10.3389/fvets.2025.1608792
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2026 Intesar Ali Mezeal

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.





1.png)
4.png)




